Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
cdhA_2Caffeine dehydrogenase subunit alpha. (826 aa)    
Predicted Functional Partners:
cdhC_2
Caffeine dehydrogenase subunit gamma.
 
 0.997
kdhA_2
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
 
 0.982
cdhC_1
Caffeine dehydrogenase subunit gamma.
 
 0.968
AMY54806.1
Hypothetical protein.
 
  
 0.951
yagT
Putative xanthine dehydrogenase YagT iron-sulfur-binding subunit.
 
 0.938
kdhA_1
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
 
 0.922
pucA_2
Putative xanthine dehydrogenase subunit A.
 
  
 0.871
pucA_1
Putative xanthine dehydrogenase subunit A.
 
  
 0.802
pucA_3
Putative xanthine dehydrogenase subunit A.
 
  
 0.802
pucR_3
Purine catabolism regulatory protein.
 
   
 0.767
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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