Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylB_3Xylulose kinase. (451 aa)    
Predicted Functional Partners:
lacD2
Tagatose 1,6-diphosphate aldolase 2.
 
  
 0.892
rbsR_4
Ribose operon repressor.
 
 
 
 0.846
aroK_1
Shikimate kinase.
 
     0.813
fruA
PTS system fructose-specific EIIABC component.
     
 0.677
rbsB_2
D-ribose-binding periplasmic protein.
 
  
 0.639
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.477
ulaF
L-ribulose-5-phosphate 4-epimerase UlaF.
  
  
 0.468
fucA
L-fuculose phosphate aldolase.
  
  
 0.468
idnT
Gnt-II system L-idonate transporter.
  
  
 0.467
ygbN
Inner membrane permease YgbN.
  
  
 0.467
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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