Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbsB_2D-ribose-binding periplasmic protein. (323 aa)    
Predicted Functional Partners:
alsC
D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
rbsA_5
Ribose import ATP-binding protein RbsA; Belongs to the binding-protein-dependent transport system permease family.
 
 0.982
rbsC_3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.973
lsrD
Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.
 
 0.972
rbsA_3
Ribose import ATP-binding protein RbsA.
 
 0.956
ytfQ_2
ABC transporter periplasmic-binding protein YtfQ.
  
  
  0.955
mglA_2
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.949
AMY55523.1
Hypothetical protein.
  
 
 0.904
AMY52354.1
Hypothetical protein.
     
  0.900
rbsC_2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.875
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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