Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54858.1Hypothetical protein. (339 aa)    
Predicted Functional Partners:
fprB_2
Putative ferredoxin/ferredoxin--NADP reductase.
 
    0.894
AMY52521.1
Hypothetical protein.
  
     0.724
fprB_1
Putative ferredoxin/ferredoxin--NADP reductase.
 
    0.694
AMY53516.1
Putative HTH-type transcriptional regulator.
  
     0.631
paaB
1,2-phenylacetyl-CoA epoxidase, subunit B.
  
 
 0.597
AMY54064.1
Hypothetical protein.
  
   
 0.547
AMY52749.1
Hypothetical protein.
  
     0.544
AMY54859.1
Hypothetical protein.
       0.539
aftD
Alpha-(1->3)-arabinofuranosyltransferase.
  
     0.472
AMY52671.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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