Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54859.1Hypothetical protein. (432 aa)    
Predicted Functional Partners:
AMY54861.1
Hypothetical protein.
       0.544
AMY54858.1
Hypothetical protein.
       0.539
AMY54182.1
Hypothetical protein.
  
     0.512
AMY54862.1
Hypothetical protein.
       0.481
AMY56081.1
Hypothetical protein.
  
     0.480
AMY53694.1
Hypothetical protein.
  
     0.475
AMY53388.1
Hypothetical protein.
  
     0.465
AMY52724.1
Hypothetical protein.
  
     0.455
AMY53100.1
Hypothetical protein.
  
     0.429
fprB_2
Putative ferredoxin/ferredoxin--NADP reductase.
       0.424
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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