Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sigGECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (324 aa)    
Predicted Functional Partners:
AMY54242.1
Hypothetical protein.
 
 
 0.564
ywaC_2
GTP pyrophosphokinase YwaC.
       0.564
sigK
ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.550
sigJ_1
ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family.
  
   
 0.480
sigH
ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.474
todS
Sensor histidine kinase TodS.
  
  
 0.455
rshA
Anti-sigma factor RshA.
  
 
 0.454
sigD_2
ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.453
sigM
ECF RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.453
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.453
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.