Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY54889.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
mutB
Putative methylmalonyl-CoA mutase large subunit.
 
  
 0.985
mutA_2
Putative methylmalonyl-CoA mutase small subunit.
 
  
 0.981
accD5_1
Putative propionyl-CoA carboxylase beta chain 5.
 
 
 0.970
accD5_2
Putative propionyl-CoA carboxylase beta chain 5.
 
 
 0.970
accD6
Putative propionyl-CoA carboxylase beta chain 6.
 
 
 0.958
accC_1
Biotin carboxylase.
  
 
 0.905
accC_2
Biotin carboxylase.
  
 
 0.905
AMY55610.1
Putative GTPase.
  
 0.895
accD5_3
Putative propionyl-CoA carboxylase beta chain 5.
 
 
 0.838
AMY54888.1
Hypothetical protein.
       0.793
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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