Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54900.1Hypothetical protein. (189 aa)    
Predicted Functional Partners:
AMY54901.1
Putative aminopeptidase.
  
  
 0.889
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
  
 0.838
AMY54902.1
Hypothetical protein.
 
   
 0.797
AMY55482.1
Putative HTH-type transcriptional regulator.
   
    0.766
AMY56159.1
Hypothetical protein.
  
     0.737
AMY54438.1
Hypothetical protein.
  
     0.736
AMY53346.1
Putative membrane protein.
  
     0.724
AMY51370.1
Hypothetical protein.
  
     0.720
AMY54220.1
Hypothetical protein.
  
     0.717
AMY56050.1
Hypothetical protein.
  
     0.716
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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