Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54907.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
AMY54908.1
Hypothetical protein.
       0.879
AMY53312.1
Hypothetical protein.
  
    0.799
ctaF
Cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
 
     0.746
qcrC
Ubiquinol-cytochrome c reductase cytochrome c subunit.
 
   
 0.729
AMY53918.1
Hypothetical protein.
  
     0.693
ccsB
Cytochrome c biogenesis protein CcsB.
  
     0.678
qcrA
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
  
   
 0.601
AMY55000.1
Hypothetical protein.
  
     0.598
qcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
  
     0.597
ftsL
Cell division protein FtsL.
  
     0.593
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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