Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54909.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
AMY54907.1
Hypothetical protein.
       0.547
AMY54908.1
Hypothetical protein.
       0.547
tetR_5
Tetracycline repressor protein class E.
 
     0.538
AMY53062.1
Hypothetical protein.
 
    0.495
AMY54958.1
Hypothetical protein.
 
    0.428
AMY52216.1
Hypothetical protein.
  
     0.417
AMY53284.1
Hypothetical protein.
  
     0.414
AMY55434.1
Hypothetical protein.
  
     0.408
AMY53954.1
Hypothetical protein.
  
     0.407
betI_1
HTH-type transcriptional regulator BetI.
  
     0.406
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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