Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
phnFHTH-type transcriptional repressor PhnF. (237 aa)    
Predicted Functional Partners:
phnD
Phosphate-import protein PhnD.
 
  
 0.691
phnC
Phosphate-import ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
  
  
 0.643
pdhR_2
Pyruvate dehydrogenase complex repressor.
  
  
 0.597
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.582
phnE
Phosphate-import permease protein PhnE.
  
  
 0.574
phnX_2
Phosphonoacetaldehyde hydrolase.
       0.561
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.509
rclR_2
RCS-specific HTH-type transcriptional activator RclR.
   
  
 0.483
tdh
L-threonine 3-dehydrogenase.
       0.459
AMY53240.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.428
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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