Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phnDPhosphate-import protein PhnD. (322 aa)    
Predicted Functional Partners:
phnC
Phosphate-import ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.998
phnE
Phosphate-import permease protein PhnE.
 
 
 0.995
tdh
L-threonine 3-dehydrogenase.
 
     0.843
phnX_2
Phosphonoacetaldehyde hydrolase.
 
     0.792
AMY55523.1
Hypothetical protein.
  
  
 0.763
phnF
HTH-type transcriptional repressor PhnF.
 
  
 0.691
dadA
D-amino acid dehydrogenase.
 
     0.678
yvoA
HTH-type transcriptional repressor YvoA.
 
  
 0.549
pleD_1
Response regulator PleD.
     
 0.498
cph2_3
Phytochrome-like protein cph2.
     
 0.498
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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