Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
narBNitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (1393 aa)    
Predicted Functional Partners:
sir
Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 0.989
cysH_1
Putative phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.
  
 
 0.966
sbnA
Putative siderophore biosynthesis protein SbnA.
  
 
 0.946
thcD_1
Rhodocoxin reductase.
 
 
 0.926
metB
Cystathionine gamma-synthase.
  
 
 0.925
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
 
 0.925
sseB
Putative thiosulfate sulfurtransferase SseB.
    
 0.920
sseA
Putative thiosulfate sulfurtransferase SseA.
    
 0.917
AMY51729.1
Hypothetical protein.
  
  
 0.917
AMY52124.1
Putative thiosulfate sulfurtransferase.
    
 0.917
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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