Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ldtB_2L,D-transpeptidase 2. (418 aa)    
Predicted Functional Partners:
AMY54615.1
Hypothetical protein.
  
     0.594
AMY52127.1
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.593
AMY56054.1
Hypothetical protein.
  
     0.556
AMY51406.1
Hypothetical protein.
  
     0.552
lytC_1
N-acetylmuramoyl-L-alanine amidase LytC.
 
   
 0.538
AMY51974.1
Intracellular chorismate mutase.
  
     0.531
rpfB
Resuscitation-promoting factor RpfB.
 
     0.527
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
       0.518
AMY55741.1
Alpha-(1->3)-arabinofuranosyltransferase.
  
     0.510
pbpG
Penicillin-binding protein 2D.
  
  
 0.509
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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