Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dhmA1Haloalkane dehalogenase 1. (273 aa)    
Predicted Functional Partners:
fabR
HTH-type transcriptional repressor FabR.
       0.825
AMY54994.1
Stearoyl-CoA 9-desaturase electron transfer partner.
  
  
 0.500
yvaM_1
AB hydrolase superfamily protein YvaM.
  
     0.488
cpo_3
Non-heme chloroperoxidase.
  
     0.473
bbsG_3
(R)-benzylsuccinyl-CoA dehydrogenase.
  
  0.463
cpo_2
Non-heme chloroperoxidase.
  
     0.423
acdA_7
Acyl-CoA dehydrogenase.
  
  0.405
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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