Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54994.1Stearoyl-CoA 9-desaturase electron transfer partner. (370 aa)    
Predicted Functional Partners:
desA3_4
Stearoyl-CoA 9-desaturase.
  
 0.965
desA3_3
Stearoyl-CoA 9-desaturase.
  
 0.881
desA3_1
Stearoyl-CoA 9-desaturase.
 
  
 0.869
desA3_2
Stearoyl-CoA 9-desaturase.
 
  
 0.869
AMY54996.1
Hypothetical protein.
 
     0.867
fabR
HTH-type transcriptional repressor FabR.
 
  
 0.850
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
 0.741
fprB_1
Putative ferredoxin/ferredoxin--NADP reductase.
 
 
 0.721
iscS
IscS-like cysteine desulfurase.
  
 0.699
ophA1_2
Phthalate dioxygenase reductase.
 
   
 0.690
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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