Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54996.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
desA3_4
Stearoyl-CoA 9-desaturase.
 
     0.881
AMY54994.1
Stearoyl-CoA 9-desaturase electron transfer partner.
 
     0.867
fabR
HTH-type transcriptional repressor FabR.
 
     0.732
AMY51621.1
Hypothetical protein.
  
     0.643
AMY54258.1
Hypothetical protein.
  
     0.558
AMY53432.1
Hypothetical protein.
  
     0.516
AMY54085.1
Hypothetical protein.
  
     0.503
papA2
Trehalose-2-sulfate acyltransferase papA2.
  
     0.429
AMY53197.1
Hypothetical protein.
  
     0.419
AMY54255.1
Hypothetical protein.
  
     0.418
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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