AMY55002.1 protein (Rhodococcus fascians D188)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AMY55002.1

Putative multidrug export ATP-binding/permease protein. (598 aa)

Predicted Functional Partners:

nicR

0.810

AMY53627.1

0.673

yigZ

0.657

acuC

0.561

ftsH_2

0.545

dnaK_1

0.523

AMY54684.1

0.515

AMY54742.1

0.507

glpK

0.486

ettA_2

0.476

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY53627.1	AMY54684.1	A3L23_02286	A3L23_03359	Putative ABC transporter ATP-binding protein.	Hypothetical protein.	0.433
AMY53627.1	AMY54742.1	A3L23_02286	A3L23_03417	Putative ABC transporter ATP-binding protein.	Hypothetical protein.	0.433
AMY53627.1	AMY55002.1	A3L23_02286	A3L23_03684	Putative ABC transporter ATP-binding protein.	Putative multidrug export ATP-binding/permease protein.	0.673
AMY53627.1	acuC	A3L23_02286	A3L23_04490	Putative ABC transporter ATP-binding protein.	Acetoin utilization protein AcuC.	0.561
AMY53627.1	ettA_2	A3L23_02286	A3L23_01148	Putative ABC transporter ATP-binding protein.	Energy-dependent translational throttle protein EttA.	0.402
AMY53627.1	ftsH_2	A3L23_02286	A3L23_02679	Putative ABC transporter ATP-binding protein.	ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.	0.545
AMY53627.1	glpK	A3L23_02286	A3L23_02208	Putative ABC transporter ATP-binding protein.	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	0.486
AMY54684.1	AMY53627.1	A3L23_03359	A3L23_02286	Hypothetical protein.	Putative ABC transporter ATP-binding protein.	0.433
AMY54684.1	AMY55002.1	A3L23_03359	A3L23_03684	Hypothetical protein.	Putative multidrug export ATP-binding/permease protein.	0.515
AMY54684.1	acuC	A3L23_03359	A3L23_04490	Hypothetical protein.	Acetoin utilization protein AcuC.	0.434
AMY54684.1	dnaK_1	A3L23_03359	A3L23_01070	Hypothetical protein.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.404
AMY54684.1	ftsH_2	A3L23_03359	A3L23_02679	Hypothetical protein.	ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.	0.588
AMY54742.1	AMY53627.1	A3L23_03417	A3L23_02286	Hypothetical protein.	Putative ABC transporter ATP-binding protein.	0.433
AMY54742.1	AMY55002.1	A3L23_03417	A3L23_03684	Hypothetical protein.	Putative multidrug export ATP-binding/permease protein.	0.507
AMY54742.1	acuC	A3L23_03417	A3L23_04490	Hypothetical protein.	Acetoin utilization protein AcuC.	0.434
AMY54742.1	dnaK_1	A3L23_03417	A3L23_01070	Hypothetical protein.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.404
AMY54742.1	ftsH_2	A3L23_03417	A3L23_02679	Hypothetical protein.	ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.	0.588
AMY55002.1	AMY53627.1	A3L23_03684	A3L23_02286	Putative multidrug export ATP-binding/permease protein.	Putative ABC transporter ATP-binding protein.	0.673
AMY55002.1	AMY54684.1	A3L23_03684	A3L23_03359	Putative multidrug export ATP-binding/permease protein.	Hypothetical protein.	0.515
AMY55002.1	AMY54742.1	A3L23_03684	A3L23_03417	Putative multidrug export ATP-binding/permease protein.	Hypothetical protein.	0.507