Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gdhNAD-specific glutamate dehydrogenase. (1610 aa)    
Predicted Functional Partners:
gltB_1
Glutamate synthase [NADPH] large chain.
     
 0.942
gltB_2
Glutamate synthase [NADPH] large chain.
     
 0.942
glnA_3
Glutamine synthetase 1.
     
 0.932
glnA_2
Putative glutamine synthetase 2.
     
 0.930
gms
Glutamate--methylamine ligase; Belongs to the glutamine synthetase family.
     
 0.917
rocA1
1-pyrroline-5-carboxylate dehydrogenase 1.
  
 
 0.914
gadA
Glutamate decarboxylase alpha; Belongs to the group II decarboxylase family.
     
 0.913
gdhA
NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.912
amiF
Formamidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.
     
 0.910
nasD_1
Nitrite reductase [NAD(P)H]; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
    
 0.906
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (26%) [HD]