Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
malLOligo-1,6-glucosidase. (551 aa)    
Predicted Functional Partners:
mak1
Maltokinase.
 0.995
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
 
 0.932
malQ
4-alpha-glucanotransferase.
  
 
 0.931
nplT
Neopullulanase.
 
  
0.927
ams
Amylosucrase.
  
  
 
0.924
rbsR_2
Ribose operon repressor.
  
  
 0.659
ccpA_1
Catabolite control protein A.
  
  
 0.659
rbsR_3
Ribose operon repressor.
  
  
 0.659
cytR
HTH-type transcriptional repressor CytR.
  
  
 0.659
rbsR_4
Ribose operon repressor.
  
  
 0.659
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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