Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nei1_3Endonuclease 8 1; Belongs to the FPG family. (242 aa)    
Predicted Functional Partners:
nei1_2
Endonuclease 8 1.
  
  
 
0.927
nei1_1
Endonuclease 8 1.
  
  
 
0.925
rpiB
Ribose-5-phosphate isomerase B.
       0.785
mutM
Formamidopyrimidine-DNA glycosylase.
  
   
 0.755
polA_1
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.546
deaD_1
ATP-dependent RNA helicase DeaD.
  
  
 0.512
rhpA
DEAD-box ATP-dependent RNA helicase RhpA.
  
  
 0.512
polC
DNA polymerase III PolC-type.
  
  
 0.509
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.476
AMY55019.1
Hypothetical protein.
       0.469
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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