Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
garK_3Glycerate 2-kinase; Belongs to the glycerate kinase type-1 family. (356 aa)    
Predicted Functional Partners:
garK_1
Glycerate 2-kinase; Belongs to the glycerate kinase type-1 family.
  
  
 
0.924
garK_2
Glycerate 2-kinase; Belongs to the glycerate kinase type-1 family.
  
  
 
0.919
AMY51987.1
Putative 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.909
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.903
ald_1
3-succinoylsemialdehyde-pyridine dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.902
pspA_3
Phosphoserine phosphatase 1.
     
 0.901
pspA_4
Phosphoserine phosphatase 1.
     
 0.901
erpA
Iron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family.
       0.619
AMY55209.1
Hypothetical protein.
       0.542
cobU
Bifunctional adenosylcobalamin biosynthesis protein CobU.
       0.533
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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