Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
rclR_2RCS-specific HTH-type transcriptional activator RclR. (329 aa)    
Predicted Functional Partners:
AMY55346.1
Hypothetical protein.
 
     0.784
AMY53240.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.576
ywtF
Putative transcriptional regulator YwtF.
   
    0.567
AMY55344.1
Hypothetical protein.
       0.515
AMY55345.1
Hypothetical protein.
       0.510
dasR
HTH-type transcriptional repressor DasR.
   
  
 0.483
mngR
Mannosyl-D-glycerate transport/metabolism system repressor MngR.
   
  
 0.483
yvoA
HTH-type transcriptional repressor YvoA.
   
  
 0.483
phnF
HTH-type transcriptional repressor PhnF.
   
  
 0.483
AMY53234.1
Hypothetical protein.
  
     0.463
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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