Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pdtaRPutative transcriptional regulatory protein pdtaR. (210 aa)    
Predicted Functional Partners:
pdtaS
Putative sensor histidine kinase pdtaS.
 
   
 0.864
AMY55351.1
Leu/Ile/Val-binding protein homolog 3.
  
 
 0.820
rpsA_1
30S ribosomal protein S1.
 
    0.697
AMY55152.1
Hypothetical protein.
   
    0.594
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
    0.593
tcrX
Putative transcriptional regulatory protein TcrX.
  
   
 0.525
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
    0.511
AMY55348.1
Hypothetical protein.
       0.444
AMY55349.1
Hypothetical protein.
       0.444
whiB3_2
Redox-responsive transcriptional regulator WhiB3; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.426
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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