Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY55354.1Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. (329 aa)    
Predicted Functional Partners:
lptB_3
Lipopolysaccharide export system ATP-binding protein LptB.
 
 0.999
livF_3
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 0.998
livH_4
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.996
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
 0.994
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 0.991
livH_1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.990
AMY55351.1
Leu/Ile/Val-binding protein homolog 3.
 
 
 0.990
AMY52733.1
Leu/Ile/Val-binding protein homolog 3.
 
 
 0.979
livH_2
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.929
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.898
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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