Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybhR_2Inner membrane transport permease YbhR. (251 aa)    
Predicted Functional Partners:
ybhF
Putative ABC transporter ATP-binding protein YbhF.
  
 0.983
AMY55395.1
Putative 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family.
       0.759
AMY52854.1
Hypothetical protein.
  
  
 0.737
drrA_4
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.698
tyrS
Tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.582
bioM
Biotin transport ATP-binding protein BioM.
  
 
 0.558
acg
Putative NAD(P)H nitroreductase acg.
 
  
 0.510
drrA_1
Doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.487
ytrB
ABC transporter ATP-binding protein YtrB.
 
  
 0.485
drrA_11
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.482
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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