Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
yutFPutative hydrolase YutF. (329 aa)    
Predicted Functional Partners:
AMY55397.1
Hypothetical protein.
  
 
 0.977
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
 
 0.908
ytpA_1
Phospholipase YtpA.
    
  0.901
plsB1
Putative acyltransferase plsB1; Belongs to the GPAT/DAPAT family.
     
  0.900
adhC2
NADP-dependent alcohol dehydrogenase C 2.
     
  0.900
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
 
   
 0.834
ppnK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
     
 0.821
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
     
 0.730
AMY55403.1
Hypothetical protein.
       0.673
mctB
Copper transporter MctB.
       0.673
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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