Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmg_2Dimethylglycine oxidase. (382 aa)    
Predicted Functional Partners:
soxA
Sarcosine oxidase subunit alpha.
 
 
 0.882
dapAL
Putative DapA-like lyase; Belongs to the DapA family.
 
   
 0.863
AMY55433.1
D-hydantoinase.
 
   
 0.830
AMY55434.1
Hypothetical protein.
 
 
  0.816
soxD
Sarcosine oxidase subunit delta.
 
 
 0.790
soxG
Sarcosine oxidase subunit gamma.
 
 
 0.588
degA_2
HTH-type transcriptional regulator DegA.
       0.529
dmg_1
Dimethylglycine oxidase; Belongs to the GcvT family.
 
 
0.511
hcnC_1
Hydrogen cyanide synthase subunit HcnC.
  
     0.472
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.456
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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