Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cpo_4Non-heme chloroperoxidase. (273 aa)    
Predicted Functional Partners:
azoB_3
NAD(P)H azoreductase.
  
    0.654
AMY55449.1
Hypothetical protein.
       0.645
entS_3
Enterobactin exporter EntS.
       0.645
bpoC_2
Putative non-heme bromoperoxidase BpoC.
  
     0.577
mutM
Formamidopyrimidine-DNA glycosylase.
     
 0.529
nreB_3
Oxygen sensor histidine kinase NreB.
       0.507
AMY55454.1
Hypothetical protein.
       0.507
degU_6
Transcriptional regulatory protein DegU.
       0.507
bpoC_1
Putative non-heme bromoperoxidase BpoC.
  
     0.486
ephD_3
Putative oxidoreductase EphD.
  
     0.482
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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