Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fadD3_33-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase. (687 aa)    
Predicted Functional Partners:
mas
Mycocerosic acid synthase.
  
 0.898
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
 0.850
lgrD_3
Linear gramicidin synthase subunit D.
  
 0.587
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.533
AMY54672.1
Putative cytochrome P450 136.
 
 0.527
AMY53376.1
Long-chain-fatty-acid--AMP ligase FadD32.
   
 0.511
dhbF_1
Dimodular nonribosomal peptide synthase.
  
 
 0.507
tycC_1
Tyrocidine synthase 3.
  
 
 0.507
tycC_3
Tyrocidine synthase 3.
  
 
 0.507
dhbF_3
Dimodular nonribosomal peptide synthase.
  
 
 0.507
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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