Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
aidB_2Putative acyl-CoA dehydrogenase AidB. (598 aa)    
Predicted Functional Partners:
fadB_3
Fatty acid oxidation complex subunit alpha.
 
 0.910
fadB_5
Fatty acid oxidation complex subunit alpha.
 
 0.826
fadJ
Fatty acid oxidation complex subunit alpha.
  
 0.811
pcaF
Beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.763
kduD
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
  
 0.756
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.750
echA6
Putative enoyl-CoA hydratase echA6; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.749
etfA
Electron transfer flavoprotein subunit alpha.
 
 
 0.674
fadI
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.671
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.652
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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