Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY55482.1Putative HTH-type transcriptional regulator. (245 aa)    
Predicted Functional Partners:
garA
Glycogen accumulation regulator GarA.
 
    0.912
AMY54900.1
Hypothetical protein.
   
    0.766
AMY55483.1
Hypothetical protein.
     
 0.738
AMY55484.1
Putative HTH-type transcriptional regulator.
 
   
 0.734
gcvH_2
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.688
pgsA1
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.578
todS
Sensor histidine kinase TodS.
  
 
 0.541
AMY55580.1
Hypothetical protein.
  
     0.529
AMY55478.1
Hypothetical protein.
       0.524
AMY55479.1
Hypothetical protein.
       0.524
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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