Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
htpX_2Protease HtpX. (318 aa)    
Predicted Functional Partners:
blaI_1
Transcriptional regulator BlaI.
 
 
  0.996
ftsH_1
ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.719
lprB
Putative lipoprotein LprB.
 
  
 0.638
cshA_2
DEAD-box ATP-dependent RNA helicase CshA.
   
 
 0.627
AMY54321.1
Hypothetical protein.
  
  
 0.616
AMY54297.1
Hypothetical protein.
  
     0.583
AMY55628.1
Hypothetical protein.
  
     0.539
cdoA
Cysteine dioxygenase.
  
     0.527
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
 
 
 
 0.518
AMY52885.1
Hypothetical protein.
 
     0.515
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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