Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
blaI_1Transcriptional regulator BlaI. (127 aa)    
Predicted Functional Partners:
htpX_2
Protease HtpX.
 
 
  0.996
AMY52488.1
Hypothetical protein.
  
  
 0.673
copZ
Copper chaperone CopZ.
  
  
 0.673
mprF
Phosphatidylglycerol lysyltransferase.
       0.507
xynZ_1
Endo-1,4-beta-xylanase Z.
       0.505
cshA_2
DEAD-box ATP-dependent RNA helicase CshA.
       0.503
lprB
Putative lipoprotein LprB.
  
    0.485
yusV_2
Putative siderophore transport system ATP-binding protein YusV.
       0.481
feuC
Iron-uptake system permease protein FeuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.481
gndA
6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
       0.465
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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