Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY55507.1Hypothetical protein; Belongs to the HpcH/HpaI aldolase family. (423 aa)    
Predicted Functional Partners:
alc
Allantoicase; Belongs to the allantoicase family.
 
     0.831
AMY55506.1
Putative esterase.
     
 0.801
ureF
Urease accessory protein UreF.
 
     0.801
uao
Uric acid degradation bifunctional protein.
 
     0.785
uox
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
     0.771
ureD
Urease accessory protein UreD.
 
     0.720
hiuH
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.713
ureC
Urease subunit alpha.
       0.624
ureA
Urease subunit alpha; Belongs to the urease beta subunit family.
       0.619
ulaF
L-ribulose-5-phosphate 4-epimerase UlaF.
   
    0.587
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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