Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
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Co-expression
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[Homology]
Score
AMY55514.1Hypothetical protein. (266 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.907
bfrB_1
Ferritin BfrB; Iron-storage protein.
     
  0.900
bfrB_2
Ferritin BfrB; Iron-storage protein.
     
  0.900
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
     
  0.900
cld
Chlorite dismutase.
     
  0.900
sttH
Streptothricin hydrolase.
       0.529
AMY55513.1
NADH dehydrogenase-like protein.
       0.513
AMY52455.1
Amino acid--[acyl-carrier-protein] ligase.
  
     0.469
uvrA_4
UvrABC system protein A.
       0.466
AMY52453.1
Aminoacyl carrier protein.
  
     0.423
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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