Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55555.1Hypothetical protein. (148 aa)    
Predicted Functional Partners:
cobL
Precorrin-6Y C(5,15)-methyltransferase.
 
     0.806
AMY55554.1
Putative oxidoreductase.
  
    0.793
cobK
Precorrin-6A reductase.
       0.696
AMY52320.1
Putative nitroreductase.
  
     0.584
fgd1_3
F420-dependent glucose-6-phosphate dehydrogenase.
  
   
 0.574
AMY51746.1
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.520
AMY52274.1
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.514
cobM
Precorrin-4 C(11)-methyltransferase; Belongs to the precorrin methyltransferase family.
       0.494
AMY55285.1
Putative nitroreductase.
  
   
 0.481
AMY53617.1
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.446
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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