Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55575.1Hypothetical protein. (270 aa)    
Predicted Functional Partners:
AMY55574.1
Hypothetical protein.
       0.879
trmI
tRNA (adenine(58)-N(1))-methyltransferase TrmI; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
       0.665
paaZ_1
Bifunctional protein PaaZ.
 
 
 0.473
fadB_1
Putative enoyl-CoA hydratase.
  
 
 0.450
paaZ_2
Bifunctional protein PaaZ.
  
 
 0.448
AMY56069.1
Hypothetical protein.
  
     0.441
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.435
katA
Catalase; Belongs to the catalase family.
  
 0.435
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
   
 
 0.432
AMY52290.1
Putative enoyl-CoA hydratase 1.
  
 
 0.420
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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