Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY55603.1Hypothetical protein. (487 aa)    
Predicted Functional Partners:
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.737
yfdE_3
Acetyl-CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family.
 
 
 0.599
AMY55605.1
Putative trans-acting enoyl reductase.
     
 0.535
upp_1
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
 
 
    0.528
upp_2
Uracil phosphoribosyltransferase; Belongs to the UPRTase family.
 
 
    0.526
gshA
Glutamate--cysteine ligase.
       0.498
AMY54257.1
Hypothetical protein.
  
 0.475
dhbF_1
Dimodular nonribosomal peptide synthase.
  
 
 0.454
tycC_1
Tyrocidine synthase 3.
  
 
 0.454
tycC_3
Tyrocidine synthase 3.
  
 
 0.454
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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