Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55608.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
glbO
Group 2 truncated hemoglobin GlbO.
      0.886
rihA
Pyrimidine-specific ribonucleoside hydrolase RihA.
       0.803
proP_8
Proline/betaine transporter.
       0.548
dps
DNA protection during starvation protein; Belongs to the Dps family.
  
  
 0.446
ftpA
Fine tangled pili major subunit; Belongs to the Dps family.
  
  
 0.446
todS
Sensor histidine kinase TodS.
  
  
 0.440
AMY55523.1
Hypothetical protein.
  
  
 0.417
hchA_1
Molecular chaperone Hsp31 and glyoxalase 3.
  
  
 0.412
yraA
Putative cysteine protease YraA.
  
  
 0.412
AMY52576.1
Hypothetical protein.
   
  
 0.410
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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