Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mutA_1Putative methylmalonyl-CoA mutase small subunit. (124 aa)    
Predicted Functional Partners:
AMY55610.1
Putative GTPase.
 
 
 0.998
mutA_2
Putative methylmalonyl-CoA mutase small subunit.
 
 0.998
mutB
Putative methylmalonyl-CoA mutase large subunit.
 
 
 0.997
accC_3
Biotin carboxylase.
  
  
 0.724
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
  
 0.656
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
      
 0.628
cobL
Precorrin-6Y C(5,15)-methyltransferase.
 
   
 0.577
accD3_2
Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
 
   
 0.560
accD3_3
Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
 
   
 0.558
fadB_3
Fatty acid oxidation complex subunit alpha.
     
 0.557
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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