Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acnRHTH-type transcriptional repressor AcnR. (193 aa)    
Predicted Functional Partners:
AMY55047.1
Hypothetical protein.
  
     0.752
AMY55842.1
35 kDa protein.
  
    0.748
AMY55239.1
3'-5' exoribonuclease; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.719
AMY54908.1
Hypothetical protein.
  
     0.691
AMY51974.1
Intracellular chorismate mutase.
  
    0.674
AMY55016.1
Hypothetical protein.
  
     0.657
acnA
Aconitate hydratase.
  
    0.649
AMY54336.1
Hypothetical protein.
  
     0.640
AMY55663.1
Hypothetical protein.
  
     0.638
AMY55009.1
Hypothetical protein.
  
     0.627
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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