Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
crtLLycopene beta cyclase. (380 aa)    
Predicted Functional Partners:
crtI_1
Phytoene desaturase (lycopene-forming).
 
 
 0.978
pds
15-cis-phytoene desaturase.
 
  
 0.959
fabG_14
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 0.854
crtB
All-trans-phytoene synthase.
 
  
 0.805
ku
Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
       0.800
etfB
Electron transfer flavoprotein subunit beta.
  
 
 0.796
AMY53141.1
Hypothetical protein.
 
     0.698
AMY53316.1
Hypothetical protein.
  
     0.648
crtI_2
Phytoene desaturase (lycopene-forming).
 
  
 0.648
AMY54178.1
Hypothetical protein.
  
     0.632
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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