Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sufCVegetative protein 296. (258 aa)    
Predicted Functional Partners:
sufD
FeS cluster assembly protein SufD.
 
 
 0.999
sufB
FeS cluster assembly protein SufB.
 
 0.999
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
 
  
 0.997
csd_2
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.992
AMY55635.1
Hypothetical protein.
 
  
 0.983
sufS
Cysteine desulfurase.
 
  
 0.932
csdA
Cysteine desulfurase CsdA.
 
  
 0.925
AMY55641.1
Hypothetical protein.
  
  
 0.902
csd_1
Putative cysteine desulfurase; Probably catalyzes the conversion of hercynylcysteine sulfoxide to ergothioneine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. EgtE subfamily.
 
  
 0.886
iscS
IscS-like cysteine desulfurase.
  
  
 0.821
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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