Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55641.1Hypothetical protein. (273 aa)    
Predicted Functional Partners:
sufB
FeS cluster assembly protein SufB.
  
  
 0.976
sufD
FeS cluster assembly protein SufD.
 
  
 0.964
sufC
Vegetative protein 296.
  
  
 0.902
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
  
 0.857
AMY55635.1
Hypothetical protein.
     
 0.834
AMY55644.1
Hypothetical protein.
 
     0.818
drrA_10
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
     
 0.767
AMY55642.1
Alpha-(1->6)-mannopyranosyltransferase.
       0.764
ywtF
Putative transcriptional regulator YwtF.
  
    0.756
csd_2
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
     
 0.749
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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