Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55689.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
AMY54253.1
Hypothetical protein.
    
 
 0.866
AMY54255.1
Hypothetical protein.
  
 
 
 0.817
mviN
Putative peptidoglycan biosynthesis protein MviN.
  
     0.743
AMY54252.1
Hypothetical protein.
    
 
 0.742
mlaE_2
Putative phospholipid ABC transporter permease protein MlaE.
    
   0.741
AMY52208.1
Hypothetical protein.
  
     0.739
AMY54155.1
Hypothetical protein.
  
     0.734
AMY54254.1
Hypothetical protein.
  
 
 
 0.734
AMY54251.1
Hypothetical protein.
  
 
 
 0.733
AMY53545.1
Hypothetical protein.
  
 
 
 0.730
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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