Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55699.1Hypothetical protein. (389 aa)    
Predicted Functional Partners:
AMY55698.1
Putative AAA domain-containing protein.
  
    0.809
AMY53141.1
Hypothetical protein.
  
     0.768
AMY51549.1
Hypothetical protein.
  
     0.761
AMY53346.1
Putative membrane protein.
  
     0.761
AMY53093.1
Hypothetical protein.
  
     0.755
AMY56159.1
Hypothetical protein.
  
     0.743
AMY55708.1
Hypothetical protein.
  
     0.739
AMY53328.1
Hypothetical protein.
  
     0.736
AMY54104.1
Hypothetical protein.
  
     0.733
AMY51370.1
Hypothetical protein.
  
     0.731
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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