Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55701.1Hypothetical protein. (894 aa)    
Predicted Functional Partners:
tgpA
Protein-glutamine gamma-glutamyltransferase.
 
  
 0.982
AMY55702.1
Hypothetical protein.
 
  
 0.963
AMY55087.1
Hypothetical protein.
 
  
 0.878
AMY53668.1
Hypothetical protein.
 
  
 0.867
AMY51745.1
Hypothetical protein.
 
  
 0.865
AMY55086.1
Hypothetical protein.
 
   
0.733
AMY55085.1
Hypothetical protein.
 
   
0.707
AMY52870.1
Hypothetical protein.
 
     0.703
AMY52902.1
Hypothetical protein; Multifunctional non-homologous end joining DNA repair protein LigD.
  
    0.564
AMY55699.1
Hypothetical protein.
       0.545
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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