Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55703.1Hypothetical protein. (344 aa)    
Predicted Functional Partners:
AMY55702.1
Hypothetical protein.
       0.716
AMY55998.1
Hypothetical protein.
  
     0.646
AMY54483.1
Hypothetical protein.
  
     0.573
AMY54606.1
Hypothetical protein.
  
     0.538
AMY53895.1
Hypothetical protein.
  
     0.451
AMY53936.1
Hypothetical protein.
  
     0.410
AMY55129.1
Hypothetical protein.
  
     0.407
AMY55093.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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