Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55708.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
hisS
Histidine--tRNA ligase.
       0.879
AMY55710.1
Putative metallo-hydrolase.
       0.773
AMY54467.1
Hypothetical protein.
  
     0.769
ppiB_1
Putative peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.767
AMY53093.1
Hypothetical protein.
  
     0.759
AMY53084.1
Hypothetical protein.
  
     0.757
AMY55307.1
Hypothetical protein.
  
     0.755
AMY53141.1
Hypothetical protein.
  
     0.753
AMY53155.1
Hypothetical protein.
  
     0.753
AMY53316.1
Hypothetical protein.
  
     0.751
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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